Publications / Statistical Genomics and Biological Physics

Fast and Accurate Multivariate Gaussian Modeling of Protein Families: Predicting Residue Contacts and Protein-Interaction Partners

Baldassi C., Zamparo M., Feinauer C., Procaccini A., Zecchina R., Weigt M., Pagnani A. PLoS ONE (2014)

Comments Off on Fast and Accurate Multivariate Gaussian Modeling of Protein Families: Predicting Residue Contacts and Protein-Interaction Partners

24 March 2014

Publications / Statistical Genomics and Biological Physics

Perturbation biology: inferring signaling networks in cellular systems.

Molinelli E., Korkut A., Wang W., Miller M., Gauthier N., Jing X., Kaushik P., He Q., Mills G., Solit D., Pratilas C., Weigt M., Braunstein A., Pagnani A., Zecchina R., Sander C. PLoS Computational Biology (2013)

Comments Off on Perturbation biology: inferring signaling networks in cellular systems.

19 December 2013

Publications / Statistical Genomics and Biological Physics

Direct-coupling analysis of residue coevolution captures native contacts across many protein families

Morcos F., Pagnani A., Lunt B., Bertolino A., Marks D., Sander C., Zecchina R., Onuchic J., Hwa T., Weigt M. Proceedings of the National Academy of Sciences (2011)

Comments Off on Direct-coupling analysis of residue coevolution captures native contacts across many protein families

6 December 2011

Publications / Statistical Genomics and Biological Physics

Inference of sparse combinatorial-control networks from gene-expression data: a message passing approach.

Bailly-Bechet M., Braunstein A., Pagnani A., Weigt M., Zecchina R. BMC Bioinformatics (2010)

Comments Off on Inference of sparse combinatorial-control networks from gene-expression data: a message passing approach.

1 December 2010

Publications / Statistical Genomics and Biological Physics

Aligning graphs and finding substructures by message passing

Bradde S., Braunstein A., Mahmoudi H., Tria F., Weigt M., Zecchina R. EPL (Europhysics Letters) (2010)

Comments Off on Aligning graphs and finding substructures by message passing

1 February 2010

Publications / Statistical Genomics and Biological Physics

Inference algorithms for gene networks: a statistical mechanics analysis

Braunstein A., Pagnani A., Weigt M., Zecchina R. Journal of Statistical Mechanics: Theory and Experiment (2008)

Comments Off on Inference algorithms for gene networks: a statistical mechanics analysis

1 January 2008