PUBLICATIONS

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MAL33 drives natural variation in maltose metabolism in Saccharomyces eubayanus

Quintrel P, Muñoz-Guzmán F, Villarreal P, Peña T, Garate N, Muñoz-Tapia C, Oporto, C, Larrondo L, Todd Hittinger C, Fischer G, Cubillos F Genetics (2026)

Teams: Biology of Genomes

Analysis of the HIV-2 protease’s adaptation to various ligands: characterization of backbone asymmetry using a structural alphabet

Triki, D., Cano Contreras, M. E., Flatters, D., Visseaux, B., Descamps, D., Camproux, A. C., & Regad, L. (2018). Analysis of the HIV-2 protease’s adaptation to various ligands: characterization of backbone asymmetry using a structural alphabet. Scientific Reports, 8(1), 710.Ex: Smith, J., Doe, A., Johnson, B. * (2026)

Teams: Test-biology

Modeling Protein Evolution via Generative Inference From Monte Carlo Chains to Population Genetics

Calvanese, F., Peinetti, G., Pavlinova, P., Nghe, P. and Weigt, M. Nucleic Acids Research (2026)

Teams: Statistical Genomics and Biological Physics

Natural diversity of telomere length distributions across 100 Saccharomyces cerevisiae strains

Garrido C, Gómez-Muñoz C, Kornobis E, Agier N, Ilioaia O, Fischer G, Xu Z Genome Research (2026)

Teams: Biology of Genomes

Repeated losses of self-fertility shaped heterozygosity and polyploidy in yeast evolution

Vittorelli N, Gómez-Muñoz C, Andriushchenko I, Ollivier L, Agier N, Delmas S, Corbeau Y, Achaz G, Cosentino Lagomarsino M, Liti G, Llorente B, Fischer G. Proc Natl Acad Sci U S A (2026)

Teams: Biology of Genomes

Integrating experimental feedback improves generative models for biological sequences.

Nucleic Acids Research (2025)

Teams: Biology of Genomes, Computational Medicine, Statistical Genomics and Biological Physics

Interspecific interactions and aging: Prediction of gerogenic bacteria and critical human protein targets of microbial infections

Dai, Y., Boussaguet, N., Teulière, J., Bonnefous, H., Budzinski, E., Lopez, P., Haraoui, L., Bapteste, E. Mechanisms of Ageing and Development (2025)

Teams: Adaptation, Intégration, Reticulation, Evolution (AIRE)

Stylococcus aureus and S. brevis sp. nov. (Chrysophyceae) and their phylogenetic relationship to Lagynion

Andersen, R.A., Graf, L. ... Yoon, H.S. Phycologia (2025)

Teams: Horizontal Evolution of Algal Lifestyles (HEAL)

Gene expression and co-expression heterogeneity patterns and biodemography analyses during the cell cycle encourage aging studies in archaea

Dai, Y., Gomez-Raya-Vilanova, M., Teulière, J., Toucourou, M., Corel, E., Haraoui, L., Lopez, P., Lapointe, F., Franceschi, C., Baudisch, A., Bhattacharya, D., Cvirkaite-Krupovic, V., Krupovic, M., Bapteste, E. GeroScience (2025)

Teams: Adaptation, Intégration, Reticulation, Evolution (AIRE)

The CST complex mediates a post-resection non-homologous end joining repair pathway and promotes local deletions in Saccharomyces cerevisiae

Ilioaia, O., Dudragne, L., Brocas, C., Meneu, L., Koszul, R., Dubrana, K., Xu, Z. Cell Genomics (2025)

Teams: Telomere & Genome Stability