UDock2 is a free interactive protein docking system, intended for both naive and experienced users. 

VTX is a molecular visualization software capable to handle most molecular structures and dynamics trajectories file formats. It features a real-time high-performance molecular graphics engine, based on modern OpenGL, optimized for the visualization of massive molecular systems and molecular dynamics trajectories. VTX includes multiple interactive camera and user interaction features, notably free-fly navigation and a fully modular graphical user interface designed for increased usability. It allows the production of high-resolution images for presentations and posters with custom background. VTX design is focused on performance and usability for research, teaching and educative purposes.

VTX is open source and free for non commercial use. Builds for Windows and Ubuntu Linux are available at http://vtx.drugdesign.fr. The source code is available at https://github.com/VTX-Molecular-Visualization

iBIS2Analyzer is a web server dedicated to a phylogeny-driven coevolution analysis of protein families with different evolutionary pressure. It is based on the iterative version, iBIS2, of the coevolution analysis method BIS, Blocks in Sequences. iBIS2 is designed to iteratively select and analyse subtrees in phylogenetic trees, possibly large and comprising thousands of sequences.

A tool to detect clusters of the coevolving positions in a multiple sequence alignment of highly conserved protein sequences

Coevolution in OVerlapped sequences by Tree analysis (COVTree) is a web server providing the online analysis of coevolving amino-acid pairs in overlapping genes, where residues might be located inside or outside the overlapping region.

A method to identify highly sensitive residues and predicts deleterious mutations.

Co-evolution analysis of the envelope glycoproteins E1 and E2 of the Hepatitis C Virus (HCV)

An empirical scoring function that estimates the binding affinity between two proteins, given the 3D structure of their complex.

INTerface Builder (INTBuilder): a fast and easy-to-use software to compute interfaces between two protein structures