python package to determine the location and the size of telomeric repeats from genome assemblies

R package to estimate ploidy from flow cytometry data

MUM&Co is a bash script that uses Whole Genome Alignment information provided by MUMmer (v3 and v4) to detect structural variations including deletions, insertions, reciprocal translocations and inversions.

A novel profile-based domain annotation pipeline based on the multi-source domain annotation strategy.

A split-alignment tool to infer structural variants (currently implemented for deletions only) from large short-read datasets.

Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data

BIS2Analyzer is a webserver providing the online analysis of coevolving amino-acid pairs in protein alignments, especially designed for vertebrate and viral protein families, which typically display a small number of highly similar sequences. 

CLADE:  A new generation domain identification program based on a multi-source strategy. 

DAMA: A multi-objective approach that accurately resolves protein domain architectures

A Web Tool to Estimate Mutation Rates from Fluctuation Analysis